Variant report

Variant	rs6850902
Chromosome Location	chr4:175313339-175313340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175295867..175300840-chr4:175308338..175314041,5	K562	blood:

Variant related genes	Relation type
ENSG00000249875	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11727574	0.88[AMR][1000 genomes]
rs11732586	0.88[AMR][1000 genomes]
rs11735455	0.88[AMR][1000 genomes]
rs13149810	0.83[AMR][1000 genomes]
rs1922384	0.82[AMR][1000 genomes]
rs28519075	0.88[AMR][1000 genomes]
rs28657489	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs34400328	0.82[AMR][1000 genomes]
rs34609084	0.83[AMR][1000 genomes]
rs34717346	0.88[AMR][1000 genomes]
rs35078417	0.88[AMR][1000 genomes]
rs35347093	0.83[AMR][1000 genomes]
rs4131102	0.88[AMR][1000 genomes]
rs4131103	0.88[AMR][1000 genomes]
rs4273447	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4568217	0.88[AMR][1000 genomes]
rs62335849	0.81[AMR][1000 genomes]
rs62335857	0.82[AMR][1000 genomes]
rs67728476	0.83[AMR][1000 genomes]
rs6835446	0.88[AMR][1000 genomes]
rs6852435	0.88[AMR][1000 genomes]
rs6853004	0.81[AMR][1000 genomes]
rs7655606	0.88[AMR][1000 genomes]
rs7656628	0.88[AMR][1000 genomes]
rs7671492	0.88[AMR][1000 genomes]
rs7686494	0.80[AMR][1000 genomes]
rs7689484	0.88[AMR][1000 genomes]
rs7695912	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	esv3352016	chr4:175304977-175322711	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175310600-175315400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:175311400-175315800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:175312400-175318200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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