Variant report

Variant	rs6850910
Chromosome Location	chr4:28490971-28490972
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28533166	1.00[AMR][1000 genomes]
rs28848902	1.00[AMR][1000 genomes]
rs56272392	1.00[AMR][1000 genomes]
rs58191597	1.00[AMR][1000 genomes]
rs7678990	1.00[AMR][1000 genomes]
rs7686530	1.00[AMR][1000 genomes]
rs9993161	1.00[AMR][1000 genomes]
rs9996736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28481800-28492200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:28484000-28492000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:28484400-28492000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:28484800-28491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:28484800-28492200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:28485800-28492000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:28490400-28491200	Enhancers	Brain Substantia Nigra	brain
8	chr4:28490600-28491000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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