Variant report

Variant	rs6852099
Chromosome Location	chr4:106819889-106819890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35132891	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4600917	0.84[ASN][1000 genomes]
rs62317723	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6811135	0.83[ASN][1000 genomes]
rs6827080	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6856422	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106824400	Weak transcription	Small Intestine	intestine
2	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
3	chr4:106818200-106820200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr4:106818200-106830400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:106819200-106820000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
6	chr4:106819200-106821400	Weak transcription	HSMMtube	muscle
7	chr4:106819200-106836200	Weak transcription	Aorta	Aorta
8	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:106819400-106820000	Enhancers	Fetal Intestine Small	intestine
10	chr4:106819400-106820200	Enhancers	GM12878-XiMat	blood
11	chr4:106819400-106820600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr4:106819400-106820800	Enhancers	Pancreas	Pancrea
13	chr4:106819400-106820800	Enhancers	HepG2	liver
14	chr4:106819400-106823400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:106819400-106825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:106819400-106830600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:106819600-106820000	Enhancers	Fetal Intestine Large	intestine
18	chr4:106819600-106820800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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