Variant report

Variant	rs6852613
Chromosome Location	chr4:7035637-7035638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:7035124..7037525-chr4:7037530..7039680,2	MCF-7	breast:
2	chr4:7034020..7035907-chr4:7069451..7071819,3	K562	blood:
3	chr4:7034085..7040772-chr4:7043820..7047011,11	MCF-7	breast:
4	chr4:7033122..7034926-chr4:7035026..7037064,2	MCF-7	breast:
5	chr4:7033895..7036038-chr4:7047743..7049947,2	K562	blood:
6	chr4:7034052..7036978-chr4:7048752..7050371,2	MCF-7	breast:
7	chr4:7034693..7037093-chr4:7038145..7041027,2	K562	blood:
8	chr4:7034507..7036489-chr4:7043696..7045651,2	MCF-7	breast:
9	chr4:7001304..7003449-chr4:7034054..7035839,2	K562	blood:
10	chr4:7019569..7021853-chr4:7034145..7036760,2	MCF-7	breast:
11	chr4:7024264..7027717-chr4:7032650..7036729,4	MCF-7	breast:
12	chr4:6988317..6990281-chr4:7032649..7036094,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC96-1	chr4:7032281-7035780	ENSG00000245748

No data

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction
ENSG00000173011	Chromatin interaction
ENSG00000245748	Chromatin interaction
ENSG00000173013	Chromatin interaction
ENSG00000109519	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11546450	0.88[MEX][hapmap];0.83[EUR][1000 genomes]
rs55688389	0.97[EUR][1000 genomes]
rs55882710	0.97[EUR][1000 genomes]
rs60228659	0.89[EUR][1000 genomes]
rs67602077	0.94[EUR][1000 genomes]
rs6832482	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv878532	chr4:7010504-7055603	Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv878533	chr4:7032180-7063524	Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv4217	chr4:7035512-7080230	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6994000-7043200	Weak transcription	Right Atrium	heart
2	chr4:7011600-7036600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:7011600-7043600	Weak transcription	Psoas Muscle	Psoas
4	chr4:7013200-7044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:7018400-7043200	Weak transcription	Fetal Heart	heart
6	chr4:7021400-7036200	Strong transcription	Fetal Muscle Trunk	muscle
7	chr4:7024400-7036200	Weak transcription	HSMM	muscle
8	chr4:7028400-7036200	Weak transcription	NHDF-Ad	bronchial
9	chr4:7029600-7036400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:7030000-7036000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:7030000-7036400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:7030000-7037400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:7031000-7036400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:7031400-7036600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:7031600-7035800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:7032800-7044000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:7033000-7037000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:7033000-7043600	Weak transcription	Fetal Kidney	kidney
19	chr4:7033200-7043600	Weak transcription	Fetal Brain Male	brain
20	chr4:7033400-7036200	Weak transcription	NHLF	lung
21	chr4:7033400-7043200	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:7033400-7043400	Weak transcription	HUVEC	blood vessel
23	chr4:7033800-7043800	Weak transcription	Small Intestine	intestine
24	chr4:7034200-7036200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:7034200-7036200	Weak transcription	Osteobl	bone
26	chr4:7034200-7036800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:7034200-7039400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:7034400-7036000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:7034400-7036000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:7034400-7036000	Weak transcription	Lung	lung
31	chr4:7034400-7036000	Weak transcription	NHEK	skin
32	chr4:7034400-7036200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:7034400-7036200	Weak transcription	Fetal Lung	lung
34	chr4:7034400-7036200	Weak transcription	NH-A	brain
35	chr4:7034400-7036400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:7034400-7037200	Weak transcription	GM12878-XiMat	blood
37	chr4:7034400-7039200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr4:7034400-7039800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:7034400-7040000	Weak transcription	Fetal Thymus	thymus
40	chr4:7034400-7043000	Weak transcription	Right Ventricle	heart
41	chr4:7034400-7043000	Weak transcription	HSMMtube	muscle
42	chr4:7034400-7043400	Weak transcription	Primary B cells from cord blood	blood
43	chr4:7034400-7043600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:7034400-7043800	Weak transcription	Dnd41	blood
45	chr4:7034400-7044000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr4:7034400-7044000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:7034600-7035800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr4:7034600-7035800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:7034600-7036200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:7034600-7036200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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