Variant report

Variant	rs6852640
Chromosome Location	chr4:56035963-56035964
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10012700	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10016792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10019018	0.81[EUR][1000 genomes]
rs10030224	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10030489	0.91[AFR][1000 genomes]
rs10213072	0.83[EUR][1000 genomes]
rs10866423	0.91[AFR][1000 genomes]
rs11133363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11133364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12152606	0.83[EUR][1000 genomes]
rs12504287	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12645088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12716020	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12716021	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13115127	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13128075	0.91[EUR][1000 genomes]
rs13143119	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13143543	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13146373	0.91[EUR][1000 genomes]
rs1380072	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1380073	0.83[EUR][1000 genomes]
rs1551637	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1551638	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17081850	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17081852	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17081854	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17081857	0.83[EUR][1000 genomes]
rs1993584	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1993585	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1993586	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2015048	0.85[EUR][1000 genomes]
rs2085620	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2085621	0.83[EUR][1000 genomes]
rs2125486	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2125488	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2899030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34364773	0.89[AFR][1000 genomes]
rs4241993	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4277836	0.83[EUR][1000 genomes]
rs4304028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4458511	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4864960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4864961	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62306569	0.86[AFR][1000 genomes]
rs6554241	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6554242	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6810735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6812621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6837465	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6853855	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71624998	0.82[AFR][1000 genomes]
rs71624999	0.82[AFR][1000 genomes]
rs733378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7435539	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7440118	0.94[AFR][1000 genomes]
rs7696873	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56035400-56036600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:56035600-56036000	Enhancers	Esophagus	oesophagus
3	chr4:56035600-56036200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr4:56035600-56036200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:56035600-56036200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:56035600-56036200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:56035600-56036200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr4:56035600-56036200	Enhancers	NHLF	lung
9	chr4:56035600-56036400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:56035600-56036400	Enhancers	Lung	lung
11	chr4:56035600-56036800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:56035600-56036800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:56035600-56036800	Enhancers	Stomach Mucosa	stomach
14	chr4:56035800-56036000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:56035800-56036000	Weak transcription	Adipose Nuclei	Adipose
16	chr4:56035800-56036000	Enhancers	Pancreas	Pancrea
17	chr4:56035800-56036200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr4:56035800-56042200	Weak transcription	Right Atrium	heart

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