Variant report

Variant	rs6853330
Chromosome Location	chr4:93992434-93992435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10021088	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10022163	0.88[EUR][1000 genomes]
rs1032805	0.87[EUR][1000 genomes]
rs10440323	0.86[EUR][1000 genomes]
rs10440372	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10856899	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11097358	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1160685	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11940919	0.84[EUR][1000 genomes]
rs11940921	0.84[EUR][1000 genomes]
rs12511683	0.87[EUR][1000 genomes]
rs12651392	0.86[EUR][1000 genomes]
rs13107832	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1354296	0.87[EUR][1000 genomes]
rs1503209	0.82[EUR][1000 genomes]
rs1503210	0.80[EUR][1000 genomes]
rs1503211	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1503212	0.87[EUR][1000 genomes]
rs1503213	0.87[EUR][1000 genomes]
rs1503216	0.87[EUR][1000 genomes]
rs1511294	0.85[EUR][1000 genomes]
rs1511296	0.83[EUR][1000 genomes]
rs1566744	0.88[EUR][1000 genomes]
rs2089820	0.86[EUR][1000 genomes]
rs2271385	0.81[EUR][1000 genomes]
rs28392586	0.87[EUR][1000 genomes]
rs28448801	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2870658	0.86[EUR][1000 genomes]
rs28707555	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2904473	0.82[EUR][1000 genomes]
rs3857063	0.81[EUR][1000 genomes]
rs3913624	0.81[EUR][1000 genomes]
rs4274812	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4303948	0.86[EUR][1000 genomes]
rs4475115	0.88[EUR][1000 genomes]
rs4502650	0.84[EUR][1000 genomes]
rs4692978	0.87[EUR][1000 genomes]
rs6829572	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6844422	0.88[EUR][1000 genomes]
rs7661153	0.86[EUR][1000 genomes]
rs7680942	0.85[EUR][1000 genomes]
rs7683744	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7686545	0.81[EUR][1000 genomes]
rs9998068	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1797112	chr4:93974179-93993208	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93988400-94002000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links