Variant report

Variant	rs6853767
Chromosome Location	chr4:80525064-80525065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1371992	0.91[AFR][1000 genomes]
rs17003989	0.83[AFR][1000 genomes]
rs7686359	0.85[AFR][1000 genomes]
rs7691273	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80520200-80532600	Weak transcription	Aorta	Aorta
2	chr4:80524600-80526000	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:80524600-80526000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:80524600-80526400	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:80524800-80525600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr4:80524800-80525600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr4:80524800-80525800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:80524800-80525800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr4:80524800-80526000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:80525000-80525200	Active TSS	Primary B cells from cord blood	blood
11	chr4:80525000-80525400	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr4:80525000-80525400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:80525000-80525400	Enhancers	Duodenum Mucosa	Duodenum
14	chr4:80525000-80525600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr4:80525000-80525800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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