Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:172785828..172788443-chr4:172789951..172792245,2	MCF-7	breast:
2	chr4:172790840..172792742-chr4:172835981..172838118,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10031122	0.84[CEU][hapmap]
rs10866351	0.80[CEU][hapmap]
rs11931247	0.82[CEU][hapmap]
rs13106824	0.81[CEU][hapmap]
rs13130415	0.93[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap]
rs1485863	0.82[CEU][hapmap]
rs1485867	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap]
rs179641	0.82[CEU][hapmap]
rs189146	0.82[CEU][hapmap]
rs332982	0.81[CEU][hapmap]
rs332983	0.82[CEU][hapmap]
rs332992	0.82[CEU][hapmap]
rs332995	0.82[CEU][hapmap]
rs332996	0.82[CEU][hapmap]
rs333002	0.86[CEU][hapmap]
rs6818985	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs6825635	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap]
rs6832294	0.82[CEU][hapmap]
rs6839553	0.87[CEU][hapmap]
rs6845054	0.82[CEU][hapmap]
rs7666494	0.87[CEU][hapmap];0.87[JPT][hapmap]
rs7690646	0.82[CEU][hapmap]
rs9998139	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv527739	chr4:172772005-172816200	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv881602	chr4:172772005-172867912	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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