Variant report

Variant	rs6854313
Chromosome Location	chr4:48712908-48712909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17656189	1.00[YRI][hapmap]
rs56837574	1.00[AFR][1000 genomes]
rs58018957	1.00[AFR][1000 genomes]
rs58763365	0.83[AFR][1000 genomes]
rs60553677	0.83[AFR][1000 genomes]
rs60750323	1.00[AFR][1000 genomes]
rs6447653	1.00[AFR][1000 genomes]
rs6447673	1.00[YRI][hapmap]
rs6811201	0.83[AFR][1000 genomes]
rs6825721	1.00[AFR][1000 genomes]
rs6825895	1.00[YRI][hapmap]
rs6829709	1.00[YRI][hapmap]
rs6844156	1.00[YRI][hapmap]
rs6849135	1.00[YRI][hapmap]
rs73814790	1.00[AFR][1000 genomes]
rs73814792	1.00[AFR][1000 genomes]
rs73814793	1.00[AFR][1000 genomes]
rs73814794	1.00[AFR][1000 genomes]
rs73814796	1.00[AFR][1000 genomes]
rs73814797	1.00[AFR][1000 genomes]
rs73815309	1.00[AFR][1000 genomes]
rs73815310	1.00[AFR][1000 genomes]
rs73815313	1.00[AFR][1000 genomes]
rs73815320	0.83[AFR][1000 genomes]
rs73815323	1.00[AFR][1000 genomes]
rs73817830	1.00[AFR][1000 genomes]
rs73817831	1.00[AFR][1000 genomes]
rs73817833	1.00[AFR][1000 genomes]
rs7658876	1.00[YRI][hapmap]
rs7665696	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7674901	1.00[YRI][hapmap]
rs7676916	1.00[YRI][hapmap]
rs7682222	1.00[YRI][hapmap]
rs7700082	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002674	chr4:48507608-49032909	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv537087	chr4:48507608-49032909	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1010923	chr4:48575156-49083089	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv537088	chr4:48575156-49083089	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1013762	chr4:48580484-49032909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv537089	chr4:48580484-49032909	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv999203	chr4:48645887-48735512	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1802666	chr4:48646594-48721327	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1013914	chr4:48652784-48728934	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv537090	chr4:48652784-48728934	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv1796692	chr4:48686817-48726266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv1792683	chr4:48686817-48764009	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv1795181	chr4:48686817-48764009	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv1793455	chr4:48686817-48859142	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1010381	chr4:48701525-49309842	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48621200-48729400	Weak transcription	Thymus	Thymus
2	chr4:48700200-48730800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:48700400-48713200	Weak transcription	Placenta	Placenta
4	chr4:48700400-48718800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:48700600-48719600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:48700800-48715600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:48701000-48713000	Weak transcription	Fetal Brain Male	brain
8	chr4:48701000-48715200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:48701000-48729600	Weak transcription	Aorta	Aorta
10	chr4:48701400-48713600	Weak transcription	Fetal Brain Female	brain
11	chr4:48701800-48715400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:48701800-48715800	Weak transcription	Fetal Kidney	kidney
13	chr4:48701800-48724600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:48702200-48716200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:48702600-48717400	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:48702800-48720800	Weak transcription	Small Intestine	intestine
17	chr4:48703400-48714800	Weak transcription	NH-A	brain
18	chr4:48703400-48722800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr4:48705600-48728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:48705800-48714000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:48706600-48718600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:48707400-48720800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:48708400-48713000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr4:48708400-48713000	Strong transcription	Primary T cells from cord blood	blood
25	chr4:48709000-48715800	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:48709000-48720200	Weak transcription	HepG2	liver
27	chr4:48709000-48723600	Weak transcription	Left Ventricle	heart
28	chr4:48709000-48724600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr4:48709000-48726400	Weak transcription	Ovary	ovary
30	chr4:48709400-48713800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:48709800-48714200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:48710200-48713000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:48710400-48713000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:48710400-48713000	Strong transcription	Primary B cells from cord blood	blood
35	chr4:48710400-48713000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:48710400-48713000	Strong transcription	Dnd41	blood
37	chr4:48710400-48713200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:48710600-48713000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr4:48710600-48713000	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr4:48711200-48713000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:48711200-48720600	Weak transcription	Fetal Intestine Small	intestine
42	chr4:48711400-48713000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:48711600-48713200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr4:48711600-48714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:48711600-48714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr4:48711800-48713200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr4:48711800-48714000	Weak transcription	NHDF-Ad	bronchial
48	chr4:48711800-48714400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr4:48711800-48724400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:48712000-48723200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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