Variant report

Variant	rs6854479
Chromosome Location	chr4:28421503-28421504
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58463766	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61629821	0.89[EUR][1000 genomes]
rs73224025	0.92[EUR][1000 genomes]
rs7674497	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3419889	chr4:28419654-28423852	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv513125	chr4:28420204-28422934	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3415858	chr4:28420314-28421598	Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv2470633	chr4:28420772-28422433	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3515363	chr4:28420904-28423002	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv8649	chr4:28421325-28422187	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv1974343	chr4:28421398-28422132	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv10865	chr4:28421456-28422091	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3515365	chr4:28421487-28422049	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3515361	chr4:28421488-28422041	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv593889	chr4:28421503-28421940	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv511260	chr4:28421503-28432456	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv593890	chr4:28421503-28432456	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3464961	chr4:28421504-28422022	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28421000-28421600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:28421200-28421600	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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