Variant report

Variant	rs6854586
Chromosome Location	chr4:79835762-79835763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79833011..79834569-chr4:79834648..79836357,2	K562	blood:
2	chr4:79829830..79832841-chr4:79834364..79837824,5	K562	blood:
3	chr4:79830154..79832739-chr4:79833941..79836867,6	K562	blood:
4	chr4:79822536..79825441-chr4:79835440..79838269,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANXA3-8	chr4:79834384-79837517	NONHSAT097093

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10009008	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003468	0.87[AMR][1000 genomes]
rs28551010	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79779800-79858200	Weak transcription	Fetal Brain Male	brain
2	chr4:79794200-79850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79794200-79859600	Weak transcription	Colonic Mucosa	Colon
4	chr4:79794400-79850000	Weak transcription	Pancreas	Pancrea
5	chr4:79794800-79850200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:79794800-79858000	Weak transcription	HepG2	liver
7	chr4:79795000-79838200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:79796400-79844800	Weak transcription	Fetal Heart	heart
9	chr4:79798000-79838400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:79799200-79858000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:79809800-79838400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:79810000-79838200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:79812000-79842800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:79814600-79859600	Weak transcription	Fetal Kidney	kidney
15	chr4:79814800-79837800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:79815200-79845400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:79815800-79838200	Weak transcription	Psoas Muscle	Psoas
18	chr4:79815800-79838400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:79815800-79846600	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:79816000-79848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:79816200-79848600	Weak transcription	Fetal Lung	lung
22	chr4:79816200-79858400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:79816400-79843200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:79827400-79858000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr4:79827400-79858000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr4:79828800-79837800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:79829000-79859200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr4:79829400-79839000	Strong transcription	Dnd41	blood
29	chr4:79830200-79850000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:79830200-79859200	Weak transcription	Hela-S3	cervix
31	chr4:79830600-79839000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr4:79831000-79838600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:79831000-79850000	Weak transcription	Gastric	stomach
34	chr4:79831200-79858000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr4:79831400-79856600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:79831600-79837400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:79832200-79836400	Weak transcription	Stomach Mucosa	stomach
38	chr4:79832800-79838400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:79833000-79836000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:79833000-79836000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:79833000-79838200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:79833000-79838400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:79833000-79843400	Weak transcription	Brain Germinal Matrix	brain
44	chr4:79833000-79849800	Weak transcription	Fetal Stomach	stomach
45	chr4:79833000-79850000	Weak transcription	Lung	lung
46	chr4:79833000-79850000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr4:79833000-79850000	Weak transcription	Spleen	Spleen
48	chr4:79833000-79850000	Weak transcription	HSMMtube	muscle
49	chr4:79833000-79859800	Weak transcription	Esophagus	oesophagus
50	chr4:79833000-79859800	Weak transcription	Right Ventricle	heart

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