Variant report

Variant	rs6854889
Chromosome Location	chr4:84702407-84702408
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2046731	0.91[EUR][1000 genomes]
rs4478182	0.91[EUR][1000 genomes]
rs4629440	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84700000-84703000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:84700000-84703000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:84700000-84703200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:84700200-84702800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:84700200-84703200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:84700200-84703200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:84700200-84704000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:84701400-84702600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:84701400-84703000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:84702000-84703000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr4:84702200-84702600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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