Variant report

Variant	rs6855668
Chromosome Location	chr4:74528627-74528628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:74528297..74529106-chr4:74730060..74730707,3	K562	blood:
2	chr4:74528090..74529212-chr4:74729841..74730672,4	MCF-7	breast:
3	chr4:74528172..74529508-chr4:74999705..75000610,7	K562	blood:
4	chr4:74528131..74529022-chr4:74788987..74789641,3	MCF-7	breast:
5	chr4:74528321..74529495-chr4:74729762..74730750,4	MCF-7	breast:
6	chr4:74528064..74529636-chr4:75024964..75026974,2	K562	blood:
7	chr4:74528518..74529057-chr4:74788798..74789482,2	K562	blood:
8	chr4:74528313..74529074-chr4:74999580..75000552,2	MCF-7	breast:
9	chr4:74528490..74531153-chr4:74959832..74962104,3	K562	blood:
10	chr4:74527976..74529636-chr4:75025474..75027779,2	K562	blood:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11721801	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1247670	0.81[JPT][hapmap]
rs1247671	0.81[JPT][hapmap]
rs12498420	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12504797	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12508661	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs13103576	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1528916	0.86[JPT][hapmap]
rs17192413	0.81[JPT][hapmap]
rs34945352	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67902316	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6814802	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74521200-74530000	Weak transcription	Thymus	Thymus
2	chr4:74524600-74534400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:74526000-74529000	Enhancers	Osteobl	bone
4	chr4:74526000-74529800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:74526200-74528800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:74526200-74529800	Enhancers	HUVEC	blood vessel
7	chr4:74526200-74531000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:74526200-74531000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:74526400-74529000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:74526400-74529000	Enhancers	HMEC	breast
11	chr4:74526400-74529000	Enhancers	HSMM	muscle
12	chr4:74526400-74529200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:74526600-74529000	Enhancers	NHEK	skin
14	chr4:74526800-74531000	Enhancers	NHDF-Ad	bronchial
15	chr4:74527000-74529200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:74527200-74528800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:74527200-74529000	Enhancers	NHLF	lung
18	chr4:74527200-74529200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr4:74527400-74528800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:74527600-74529800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:74528200-74529000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:74528200-74529200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr4:74528200-74529200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr4:74528200-74529200	Enhancers	Dnd41	blood
25	chr4:74528200-74530400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr4:74528200-74534400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:74528400-74529200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:74528400-74529200	Enhancers	Fetal Thymus	thymus
29	chr4:74528400-74529400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr4:74528400-74529800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr4:74528600-74529000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr4:74528600-74529200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr4:74528600-74529400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr4:74528600-74530200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:74528600-74530400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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