Variant report

Variant	rs6855706
Chromosome Location	chr4:76488527-76488528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17000609	1.00[AMR][1000 genomes]
rs17000623	1.00[AMR][1000 genomes]
rs17000640	1.00[AMR][1000 genomes]
rs6816985	1.00[AMR][1000 genomes]
rs6825648	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76487400-76489200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:76487400-76498400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:76487600-76489000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:76487600-76489000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:76487600-76489200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:76488200-76488800	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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