Variant report

Variant	rs6855889
Chromosome Location	chr4:166304654-166304655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166299503..166302373-chr4:166303522..166305530,3	MCF-7	breast:
2	chr4:166302127..166305075-chr4:166306395..166308343,2	MCF-7	breast:
3	chr4:166304221..166306699-chr4:166307750..166310906,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207559	Chromatin interaction
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11723867	0.80[EUR][1000 genomes]
rs66912020	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67694373	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6850000	0.94[ASW][hapmap];0.87[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166300800-166305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166300800-166305000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:166300800-166305000	Weak transcription	HMEC	breast
4	chr4:166301000-166305000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:166301200-166305400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:166301200-166305400	Weak transcription	Esophagus	oesophagus
7	chr4:166301400-166305000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:166301400-166305400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:166301400-166305400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:166301400-166305600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
12	chr4:166301600-166305000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:166302000-166305800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:166302200-166314600	Weak transcription	Brain Substantia Nigra	brain
15	chr4:166302400-166305600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:166302400-166306600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:166302600-166305000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:166302600-166306600	Weak transcription	Brain Germinal Matrix	brain
19	chr4:166303000-166304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:166303000-166306800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr4:166303200-166304800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr4:166303200-166305400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:166303200-166305400	Enhancers	HepG2	liver
24	chr4:166303200-166306800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:166303200-166307400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:166303800-166307000	Enhancers	Fetal Lung	lung
27	chr4:166304000-166304800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:166304000-166311000	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:166304200-166304800	Active TSS	Fetal Brain Female	brain
30	chr4:166304200-166305000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:166304200-166305000	Enhancers	Fetal Brain Male	brain
32	chr4:166304200-166306600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:166304400-166304800	Weak transcription	Fetal Stomach	stomach
34	chr4:166304400-166305200	Enhancers	Brain Cingulate Gyrus	brain
35	chr4:166304400-166305400	Active TSS	Aorta	Aorta
36	chr4:166304400-166305600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
38	chr4:166304600-166304800	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr4:166304600-166305000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:166304600-166305200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:166304600-166306400	Enhancers	Brain Anterior Caudate	brain

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