Variant report

Variant	rs6856059
Chromosome Location	chr4:186651847-186651848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:186642283..186645621-chr4:186649150..186653147,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6552917	0.82[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1020731	chr4:186512433-186724031	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1023412	chr4:186613289-186707428	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv537421	chr4:186613289-186707428	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6856059	ING2	cis	cerebellum	SCAN

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186640800-186653600	Weak transcription	Fetal Intestine Large	intestine
2	chr4:186642800-186657800	Weak transcription	Gastric	stomach
3	chr4:186643000-186654000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:186643800-186657800	Weak transcription	Fetal Brain Female	brain
5	chr4:186646800-186653600	Weak transcription	HepG2	liver
6	chr4:186648400-186658800	Weak transcription	Brain Germinal Matrix	brain
7	chr4:186648600-186652400	Weak transcription	Fetal Brain Male	brain
8	chr4:186649200-186653600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:186649200-186659000	Weak transcription	Fetal Kidney	kidney
10	chr4:186649600-186652200	Enhancers	HUVEC	blood vessel
11	chr4:186649800-186652400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr4:186650200-186652400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:186650200-186652400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:186650200-186652400	Enhancers	NHDF-Ad	bronchial
15	chr4:186650200-186653600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:186650600-186652400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:186650600-186652600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:186650800-186658600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:186651000-186660000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr4:186651200-186652600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:186651200-186652600	Enhancers	Fetal Stomach	stomach
22	chr4:186651400-186652400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:186651400-186652400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:186651400-186652600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:186651400-186652600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:186651600-186652000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:186651600-186652000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:186651600-186652000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:186651600-186652000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:186651600-186652000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:186651600-186652000	Enhancers	Aorta	Aorta
32	chr4:186651600-186652000	Enhancers	Brain Angular Gyrus	brain
33	chr4:186651600-186652000	Enhancers	Brain Hippocampus Middle	brain
34	chr4:186651600-186652000	Enhancers	Fetal Muscle Trunk	muscle
35	chr4:186651600-186652000	Enhancers	Fetal Thymus	thymus
36	chr4:186651600-186652000	Enhancers	Lung	lung
37	chr4:186651600-186652000	Enhancers	Psoas Muscle	Psoas
38	chr4:186651600-186652000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
39	chr4:186651600-186652000	Enhancers	Spleen	Spleen
40	chr4:186651600-186652200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:186651600-186652200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr4:186651600-186652200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:186651600-186652200	Enhancers	Placenta	Placenta
44	chr4:186651600-186652200	Genic enhancers	Left Ventricle	heart
45	chr4:186651600-186652200	Enhancers	Ovary	ovary
46	chr4:186651600-186652200	Genic enhancers	Pancreas	Pancrea
47	chr4:186651600-186652200	Enhancers	Right Atrium	heart
48	chr4:186651600-186652200	Enhancers	Small Intestine	intestine
49	chr4:186651600-186652400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr4:186651600-186652400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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