Variant report

Variant	rs6856379
Chromosome Location	chr4:129444380-129444381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:129442315..129445081-chr4:129731036..129733877,2	K562	blood:
2	chr4:129443916..129449166-chr4:129482334..129486119,6	MCF-7	breast:
3	chr4:129442460..129444542-chr4:129464798..129467523,2	K562	blood:
4	chr4:129430857..129433263-chr4:129441032..129444868,3	K562	blood:
5	chr4:129444037..129452105-chr4:129473073..129478954,15	MCF-7	breast:
6	chr4:129441725..129445424-chr4:129472669..129476774,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273077	Chromatin interaction
ENSG00000077684	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28522979	1.00[AMR][1000 genomes]
rs41297941	1.00[AMR][1000 genomes]
rs59457552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129425800-129445600	Weak transcription	Gastric	stomach
2	chr4:129437600-129447400	Enhancers	HUVEC	blood vessel
3	chr4:129439200-129449400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:129439200-129450000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:129439600-129445000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:129439600-129445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:129439600-129445400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:129439800-129445200	Weak transcription	HMEC	breast
9	chr4:129439800-129445200	Weak transcription	NHEK	skin
10	chr4:129439800-129446800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:129440000-129445200	Weak transcription	Adipose Nuclei	Adipose
12	chr4:129440200-129445600	Weak transcription	Esophagus	oesophagus
13	chr4:129440200-129450000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr4:129440400-129450000	Weak transcription	Fetal Stomach	stomach
15	chr4:129441000-129445400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:129441000-129450000	Weak transcription	Ovary	ovary
17	chr4:129441200-129445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:129441200-129450000	Weak transcription	Psoas Muscle	Psoas
19	chr4:129441400-129445600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:129442200-129445400	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:129442400-129445600	Weak transcription	Fetal Lung	lung
22	chr4:129442600-129446800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:129443200-129445200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:129443200-129445200	Weak transcription	Stomach Mucosa	stomach
25	chr4:129443200-129446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr4:129443200-129446800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:129443400-129445200	Weak transcription	HSMMtube	muscle
28	chr4:129443400-129445400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:129443400-129445400	Weak transcription	NHLF	lung
30	chr4:129443400-129445600	Weak transcription	Small Intestine	intestine
31	chr4:129443400-129446200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:129443400-129446800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:129443400-129446800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr4:129443400-129450000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:129443600-129444800	Weak transcription	Hela-S3	cervix
36	chr4:129443600-129444800	Weak transcription	HSMM	muscle
37	chr4:129443600-129444800	Weak transcription	Osteobl	bone
38	chr4:129443600-129445000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:129443600-129445200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:129443600-129445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:129443600-129445200	Weak transcription	NH-A	brain
42	chr4:129443600-129445600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:129443600-129445600	Weak transcription	Left Ventricle	heart
44	chr4:129443600-129445600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:129443600-129446800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:129443600-129447200	Weak transcription	Fetal Heart	heart
47	chr4:129443600-129448600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:129443600-129450200	Weak transcription	Lung	lung
49	chr4:129443800-129444400	Weak transcription	A549	lung
50	chr4:129443800-129444800	Weak transcription	Muscle Satellite Cultured Cells	--

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