Variant report

Variant	rs6856836
Chromosome Location	chr4:104177860-104177861
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4698895	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv830022	chr4:104087199-104257784	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv821637	chr4:104134839-104246167	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104176600-104179800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr4:104177000-104178000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr4:104177000-104178800	Active TSS	H1 Cell Line	embryonic stem cell
4	chr4:104177000-104178800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr4:104177000-104179200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr4:104177200-104178800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:104177200-104178800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr4:104177200-104179400	Active TSS	HepG2	liver
9	chr4:104177200-104180000	Active TSS	K562	blood
10	chr4:104177400-104178200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr4:104177600-104178000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr4:104177600-104179400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:104177800-104178200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:104177800-104179400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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