Variant report

Variant	rs6856886
Chromosome Location	chr4:26312506-26312507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10015035	0.82[AMR][1000 genomes]
rs13144133	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17644283	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6844659	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26306800-26313400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr4:26309600-26320600	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:26311000-26313400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:26311200-26314200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:26311800-26315000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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