Variant report

Variant	rs6857782
Chromosome Location	chr4:141869062-141869063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:141858527..141861200-chr4:141868423..141870294,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1001487	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11724213	0.94[AFR][1000 genomes]
rs11730659	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11944147	0.91[EUR][1000 genomes]
rs12504223	0.84[EUR][1000 genomes]
rs1346056	0.91[EUR][1000 genomes]
rs1364877	0.91[EUR][1000 genomes]
rs1425426	0.92[EUR][1000 genomes]
rs17424664	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1895756	0.92[EUR][1000 genomes]
rs2321685	0.91[EUR][1000 genomes]
rs2321686	0.91[EUR][1000 genomes]
rs2321687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35486006	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4956338	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6537023	0.91[EUR][1000 genomes]
rs6850499	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141856000-141875600	Weak transcription	Fetal Kidney	kidney
2	chr4:141859800-141875200	Weak transcription	Fetal Lung	lung
3	chr4:141861400-141876400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:141861400-141876600	Weak transcription	Aorta	Aorta
5	chr4:141862200-141891000	Weak transcription	Psoas Muscle	Psoas
6	chr4:141863800-141880600	Weak transcription	Left Ventricle	heart
7	chr4:141864200-141879200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:141865800-141876600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:141866200-141870200	Weak transcription	Brain Germinal Matrix	brain
10	chr4:141866200-141870600	Weak transcription	Fetal Heart	heart
11	chr4:141866200-141875800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:141866200-141876200	Weak transcription	Fetal Stomach	stomach
13	chr4:141866400-141873600	Weak transcription	NH-A	brain
14	chr4:141866600-141873600	Weak transcription	Osteobl	bone
15	chr4:141867600-141870400	Enhancers	Colon Smooth Muscle	Colon
16	chr4:141867800-141879000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:141868200-141870200	Enhancers	Rectal Smooth Muscle	rectum
18	chr4:141868400-141869200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:141868400-141869200	Enhancers	HUVEC	blood vessel
20	chr4:141868600-141869600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:141868600-141869600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:141868800-141869200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:141868800-141869200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:141868800-141869200	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr4:141868800-141869200	Enhancers	A549	lung
26	chr4:141868800-141887400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:141869000-141873600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:141869000-141877200	Weak transcription	Ovary	ovary
29	chr4:141869000-141879400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:141869000-141879600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:141869000-141889000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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