Variant report

Variant	rs6857926
Chromosome Location	chr4:91396305-91396306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:60640660..60642563-chr4:91394843..91397744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130699	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10002613	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[ASN][1000 genomes]
rs10015371	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs1033082	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs10516869	1.00[ASW][hapmap]
rs11097251	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11097253	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11725165	0.88[ASN][1000 genomes]
rs11726429	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11735785	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645541	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12646422	0.90[ASN][1000 genomes]
rs12647184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs12649004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12650836	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1510792	1.00[ASW][hapmap]
rs17016859	1.00[ASW][hapmap]
rs17016910	1.00[ASW][hapmap]
rs17016994	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs17017050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17232612	1.00[ASW][hapmap]
rs28450012	0.89[ASN][1000 genomes]
rs56933889	0.84[ASN][1000 genomes]
rs60134071	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6532231	0.90[ASN][1000 genomes]
rs6814827	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs6843585	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[ASN][1000 genomes]
rs6843603	0.97[ASN][1000 genomes]
rs7654181	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7660138	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7661714	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7662374	1.00[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91378800-91396800	Weak transcription	Gastric	stomach
2	chr4:91385200-91400400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:91395800-91398000	Weak transcription	Stomach Mucosa	stomach
4	chr4:91396000-91405800	Weak transcription	Fetal Intestine Small	intestine

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