Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174867285..174870306-chr4:174877689..174880210,3	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10025010	0.83[EUR][1000 genomes]
rs10050239	0.84[EUR][1000 genomes]
rs11723453	0.83[EUR][1000 genomes]
rs11724561	0.85[EUR][1000 genomes]
rs11734841	0.83[EUR][1000 genomes]
rs11932516	0.83[EUR][1000 genomes]
rs4285061	0.85[EUR][1000 genomes]
rs4289426	0.90[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.92[TSI][hapmap]
rs4299560	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs4331760	0.92[EUR][1000 genomes]
rs4501199	0.90[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.92[TSI][hapmap]
rs4627836	0.83[EUR][1000 genomes]
rs55801980	0.85[EUR][1000 genomes]
rs60891530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62336579	0.92[EUR][1000 genomes]
rs62336581	0.92[EUR][1000 genomes]
rs62336609	0.84[EUR][1000 genomes]
rs6814121	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818208	0.85[EUR][1000 genomes]
rs6818217	0.84[EUR][1000 genomes]
rs6830884	0.85[EUR][1000 genomes]
rs6833109	0.95[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs6845317	0.85[EUR][1000 genomes]
rs6856702	0.85[EUR][1000 genomes]
rs9998241	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881172	chr4:174772568-174873969	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830154	chr4:174781983-174940640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6858266	IQGAP2	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174868000-174868400	Enhancers	Fetal Heart	heart
2	chr4:174868200-174868400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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