Variant report

Variant	rs6858280
Chromosome Location	chr4:98157775-98157776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17026713	1.00[AMR][1000 genomes]
rs55942700	1.00[AMR][1000 genomes]
rs57796757	1.00[AMR][1000 genomes]
rs59342030	1.00[AMR][1000 genomes]
rs72880260	1.00[AMR][1000 genomes]
rs7660414	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98157200-98159200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:98157400-98160000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:98157400-98160600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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