Variant report

Variant	rs6859172
Chromosome Location	chr5:70950293-70950294
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:70950186..70952876-chr5:70957958..70960440,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs375701	1.00[AMR][1000 genomes]
rs60069076	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830340	chr5:70797113-70967110	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv532805	chr5:70916228-71020967	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70898400-70955000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:70906600-70952400	Weak transcription	Stomach Mucosa	stomach
3	chr5:70915400-70950800	Weak transcription	NHLF	lung
4	chr5:70919800-70955000	Weak transcription	HUVEC	blood vessel
5	chr5:70925400-70950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:70926600-70954000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:70927000-70954000	Strong transcription	Dnd41	blood
8	chr5:70927000-70954200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:70930400-70952600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:70931400-70953600	Weak transcription	HSMM	muscle
11	chr5:70934800-70953800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:70935000-70955800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:70936600-70955200	Weak transcription	Fetal Heart	heart
14	chr5:70938400-70954000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:70940800-70954600	Strong transcription	Liver	Liver
16	chr5:70941000-70951400	Strong transcription	Fetal Intestine Large	intestine
17	chr5:70941200-70955000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:70941400-70954200	Strong transcription	Placenta	Placenta
19	chr5:70941400-70954400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr5:70941400-70954400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:70941400-70954600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:70941400-70954600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:70941600-70954400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr5:70941600-70954600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:70942000-70951600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:70942000-70954400	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr5:70942000-70954400	Strong transcription	Adipose Nuclei	Adipose
28	chr5:70942000-70954400	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:70942200-70953800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:70942200-70954000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:70942200-70954200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr5:70943200-70955600	Weak transcription	Psoas Muscle	Psoas
33	chr5:70943400-70954400	Weak transcription	Colonic Mucosa	Colon
34	chr5:70943800-70954200	Strong transcription	Ovary	ovary
35	chr5:70944000-70952800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:70944000-70954200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:70944800-70951400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr5:70944800-70952800	Strong transcription	Primary hematopoietic stem cells	blood
39	chr5:70944800-70954200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr5:70945600-70955600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr5:70946000-70952800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr5:70946000-70954400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:70946000-70955800	Weak transcription	Osteobl	bone
44	chr5:70946200-70951000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr5:70946200-70953400	Weak transcription	Aorta	Aorta
46	chr5:70946200-70953600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:70946200-70955200	Weak transcription	Right Ventricle	heart
48	chr5:70946200-70956200	Weak transcription	NH-A	brain
49	chr5:70946200-70956400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr5:70947200-70951600	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links