Variant report

Variant	rs6860001
Chromosome Location	chr5:80288804-80288805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16878283	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878285	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731847	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv598747	chr5:79996632-80322712	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1021784	chr5:80023679-80313586	ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv537787	chr5:80023679-80313586	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv830358	chr5:80197105-80358920	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv830360	chr5:80283278-80446040	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv4897	chr5:80284196-80330223	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80278000-80293000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr5:80281400-80290800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:80281400-80290800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:80284400-80289400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:80284600-80289200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:80284600-80291600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:80284600-80294600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:80284800-80289400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr5:80285000-80295800	Weak transcription	Left Ventricle	heart
10	chr5:80286400-80290600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:80286600-80293000	Weak transcription	Fetal Intestine Small	intestine
12	chr5:80286600-80299600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:80286800-80293000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:80286800-80299800	Weak transcription	Brain Angular Gyrus	brain
15	chr5:80287000-80290000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:80287000-80291000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr5:80287200-80295800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:80287200-80299800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:80287400-80291800	Weak transcription	HepG2	liver
20	chr5:80288000-80289200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:80288000-80293800	Weak transcription	Brain Anterior Caudate	brain
22	chr5:80288000-80294000	Enhancers	Primary T cells from cord blood	blood
23	chr5:80288000-80299600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:80288200-80289400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:80288200-80295800	Weak transcription	Right Ventricle	heart
26	chr5:80288200-80300000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:80288400-80289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:80288400-80297000	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:80288600-80289000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:80288800-80296800	Weak transcription	Brain Substantia Nigra	brain
31	chr5:80288800-80299800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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