Variant report

Variant	rs6860486
Chromosome Location	chr5:115734854-115734855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2052835	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55849649	0.83[EUR][1000 genomes]
rs56023996	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61200854	0.83[EUR][1000 genomes]
rs6867997	0.83[EUR][1000 genomes]
rs6871132	1.00[CEU][hapmap]
rs73266888	1.00[EUR][1000 genomes]
rs73266890	1.00[EUR][1000 genomes]
rs73268910	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73268922	1.00[EUR][1000 genomes]
rs73781075	0.83[EUR][1000 genomes]
rs73781077	0.83[EUR][1000 genomes]
rs73781078	0.83[EUR][1000 genomes]
rs73781080	0.83[EUR][1000 genomes]
rs7711741	0.83[EUR][1000 genomes]
rs7733126	0.83[EUR][1000 genomes]
rs9327002	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522616	chr5:115725791-115744515	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1845769	chr5:115730278-115763979	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3440806	chr5:115734735-115735032	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:115707600-115748400	Weak transcription	Fetal Intestine Large	intestine
3	chr5:115708600-115754000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:115718400-115737000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:115718600-115748400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:115724800-115745600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:115724800-115749200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:115731000-115746800	Weak transcription	Fetal Intestine Small	intestine
12	chr5:115731000-115757000	Weak transcription	Gastric	stomach
13	chr5:115731800-115738000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:115731800-115741000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:115732000-115747000	Weak transcription	Aorta	Aorta
16	chr5:115732400-115737000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:115732400-115737400	Weak transcription	Brain Angular Gyrus	brain
18	chr5:115732400-115740000	Weak transcription	Adipose Nuclei	Adipose
19	chr5:115732600-115735400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:115732600-115735400	Weak transcription	Fetal Stomach	stomach
21	chr5:115732600-115737200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:115732600-115737200	Weak transcription	Brain Substantia Nigra	brain
23	chr5:115732600-115737800	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:115732600-115738000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:115732600-115746200	Weak transcription	Spleen	Spleen
26	chr5:115732600-115760200	Weak transcription	Liver	Liver
27	chr5:115732800-115735200	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:115732800-115741000	Weak transcription	Lung	lung
29	chr5:115732800-115745600	Weak transcription	Left Ventricle	heart
30	chr5:115732800-115745600	Weak transcription	Ovary	ovary
31	chr5:115732800-115745600	Weak transcription	Right Atrium	heart
32	chr5:115733000-115745600	Weak transcription	Right Ventricle	heart
33	chr5:115733200-115738200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr5:115733200-115738800	Weak transcription	Psoas Muscle	Psoas
35	chr5:115733200-115740200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr5:115733800-115754400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr5:115734000-115742400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr5:115734000-115744600	Weak transcription	Pancreas	Pancrea
39	chr5:115734200-115755200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr5:115734800-115738600	Strong transcription	Primary T cells from cord blood	blood

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