Variant report

Variant	rs6860585
Chromosome Location	chr5:126757545-126757546
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55857193	0.87[AFR][1000 genomes]
rs57304460	0.87[AFR][1000 genomes]
rs60007347	0.87[AFR][1000 genomes]
rs61170684	0.87[AFR][1000 genomes]
rs6595772	0.87[AFR][1000 genomes]
rs6868588	0.87[AFR][1000 genomes]
rs6885300	0.87[AFR][1000 genomes]
rs73783791	0.87[AFR][1000 genomes]
rs73783792	0.87[AFR][1000 genomes]
rs73783793	0.87[AFR][1000 genomes]
rs73783796	0.87[AFR][1000 genomes]
rs73783799	0.87[AFR][1000 genomes]
rs73783801	0.87[AFR][1000 genomes]
rs73783802	0.87[AFR][1000 genomes]
rs7703677	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1032587	chr5:126691103-126826978	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv830478	chr5:126721368-126937408	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126742800-126760200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:126742800-126762600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:126742800-126782000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:126742800-126792400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:126743000-126784800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:126743400-126760000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:126746200-126758000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:126746400-126760800	Weak transcription	HSMM	muscle
9	chr5:126747000-126759200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:126748400-126758600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:126753400-126761000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:126755000-126761800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:126755400-126774400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:126755800-126760200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:126755800-126763200	Weak transcription	Brain Angular Gyrus	brain
16	chr5:126756000-126758400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:126756000-126758600	Weak transcription	Brain Anterior Caudate	brain
18	chr5:126756000-126760800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:126756000-126760800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:126756000-126768000	Weak transcription	Fetal Brain Male	brain
21	chr5:126756000-126770400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr5:126756200-126759000	Weak transcription	Brain Substantia Nigra	brain
23	chr5:126756600-126758200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:126756800-126758800	Strong transcription	Fetal Muscle Leg	muscle
25	chr5:126756800-126760200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:126756800-126760600	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:126756800-126760800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:126756800-126763600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:126757200-126758200	Weak transcription	HSMMtube	muscle
30	chr5:126757400-126758000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:126757400-126758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:126757400-126758600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:126757400-126761400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:126757400-126761600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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