Variant report

Variant	rs6861670
Chromosome Location	chr5:8476306-8476307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10040826	1.00[ASN][1000 genomes]
rs10045823	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064896	1.00[ASN][1000 genomes]
rs10066543	1.00[ASN][1000 genomes]
rs10071276	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10071702	1.00[ASN][1000 genomes]
rs10512964	1.00[ASN][1000 genomes]
rs13355566	1.00[ASN][1000 genomes]
rs13357083	1.00[ASN][1000 genomes]
rs13361593	1.00[ASN][1000 genomes]
rs1392958	1.00[ASN][1000 genomes]
rs1501346	1.00[ASN][1000 genomes]
rs16880661	1.00[ASN][1000 genomes]
rs2388359	1.00[ASN][1000 genomes]
rs2388360	1.00[ASN][1000 genomes]
rs2388361	1.00[ASN][1000 genomes]
rs2388362	1.00[ASN][1000 genomes]
rs2388363	1.00[ASN][1000 genomes]
rs2388364	1.00[ASN][1000 genomes]
rs4404653	1.00[ASN][1000 genomes]
rs60571534	1.00[ASN][1000 genomes]
rs62355864	1.00[ASN][1000 genomes]
rs62357917	1.00[ASN][1000 genomes]
rs72733890	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73738746	1.00[ASN][1000 genomes]
rs7703856	1.00[ASN][1000 genomes]
rs7707778	1.00[ASN][1000 genomes]
rs7726627	1.00[ASN][1000 genomes]
rs7728052	1.00[ASN][1000 genomes]
rs7732493	1.00[ASN][1000 genomes]
rs7732609	1.00[ASN][1000 genomes]
rs7737474	1.00[ASN][1000 genomes]
rs9313248	1.00[ASN][1000 genomes]
rs9313250	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033505	chr5:8258074-8657627	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv537634	chr5:8258074-8657627	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1026496	chr5:8275119-8681693	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv537635	chr5:8275119-8681693	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427709	chr5:8353876-8519855	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv881034	chr5:8376813-8499567	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv880933	chr5:8467174-8688962	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv461929	chr5:8467900-8664747	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv597028	chr5:8467900-8664747	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv470987	chr5:8467900-8680327	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8475600-8476600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:8476000-8476400	Enhancers	Fetal Brain Male	brain

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