Variant report

Variant	rs6863009
Chromosome Location	chr5:79401691-79401692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79400700..79403257-chr5:79403572..79405764,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11738548	0.86[ASN][1000 genomes]
rs11738550	0.86[ASN][1000 genomes]
rs11750846	0.86[ASN][1000 genomes]
rs16877496	0.86[ASN][1000 genomes]
rs16877502	0.80[ASN][1000 genomes]
rs16877503	0.80[ASN][1000 genomes]
rs61127997	0.80[ASN][1000 genomes]
rs6453502	0.86[ASN][1000 genomes]
rs73123675	0.80[ASN][1000 genomes]
rs73123676	0.80[ASN][1000 genomes]
rs73123678	0.80[ASN][1000 genomes]
rs73123679	0.80[ASN][1000 genomes]
rs73123682	0.80[ASN][1000 genomes]
rs73123686	0.80[ASN][1000 genomes]
rs73123687	0.80[ASN][1000 genomes]
rs7704169	0.80[ASN][1000 genomes]
rs7718534	0.80[ASN][1000 genomes]
rs7722374	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv598744	chr5:79388745-79423347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv462219	chr5:79398394-79402236	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv598745	chr5:79398394-79402236	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv462220	chr5:79398394-79402443	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv598746	chr5:79398394-79402443	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79388000-79405000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:79389400-79412200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:79389800-79411800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:79390600-79405400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:79390800-79402000	Weak transcription	Right Atrium	heart
6	chr5:79393400-79410800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:79393800-79405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:79395200-79401800	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:79396000-79406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:79397400-79404000	Enhancers	Fetal Thymus	thymus
11	chr5:79397600-79402000	Enhancers	Primary T cells from cord blood	blood
12	chr5:79397600-79402400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr5:79397800-79403000	Enhancers	Thymus	Thymus
14	chr5:79398000-79402800	Enhancers	Fetal Heart	heart
15	chr5:79398400-79403000	Enhancers	Dnd41	blood
16	chr5:79398600-79405600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:79399400-79411000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr5:79400200-79402000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr5:79400400-79401800	Enhancers	HepG2	liver
20	chr5:79401200-79402600	Enhancers	Pancreas	Pancrea
21	chr5:79401200-79405600	Weak transcription	Right Ventricle	heart
22	chr5:79401400-79402000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:79401400-79402400	Enhancers	Fetal Intestine Large	intestine
24	chr5:79401400-79402400	Enhancers	Fetal Intestine Small	intestine
25	chr5:79401400-79405600	Weak transcription	Primary B cells from cord blood	blood
26	chr5:79401600-79402400	Enhancers	Left Ventricle	heart
27	chr5:79401600-79402800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links