Variant report

Variant	rs6863105
Chromosome Location	chr5:36440386-36440387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36435521..36437217-chr5:36439204..36440753,2	K562	blood:
2	chr5:36430520..36432569-chr5:36437537..36440478,3	K562	blood:
3	chr5:36438693..36440826-chr5:36441335..36444284,3	K562	blood:
4	chr5:36438756..36441045-chr5:36448106..36450259,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4242267	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4242268	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517278	chr5:36430755-36445802	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv597816	chr5:36431978-36443160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv597817	chr5:36433782-36460075	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36435800-36440800	Enhancers	Brain Anterior Caudate	brain
2	chr5:36436000-36441000	Weak transcription	Placenta	Placenta
3	chr5:36438600-36440400	Enhancers	K562	blood
4	chr5:36438600-36443000	Enhancers	Brain Hippocampus Middle	brain
5	chr5:36438800-36442600	Enhancers	Brain Germinal Matrix	brain
6	chr5:36438800-36442600	Enhancers	Hela-S3	cervix
7	chr5:36439000-36442400	Enhancers	Brain Substantia Nigra	brain
8	chr5:36439200-36440400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:36439200-36446600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:36439400-36441800	Weak transcription	Esophagus	oesophagus
11	chr5:36439800-36441200	Enhancers	Fetal Brain Male	brain
12	chr5:36439800-36446400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:36440000-36440400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:36440000-36440800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:36440000-36440800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:36440000-36441000	Weak transcription	Brain Angular Gyrus	brain
17	chr5:36440000-36441800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:36440000-36442200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:36440000-36444600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr5:36440200-36441000	Enhancers	Fetal Brain Female	brain
21	chr5:36440200-36441600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:36440200-36442400	Weak transcription	Fetal Thymus	thymus
23	chr5:36440200-36444200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:36440200-36444200	Weak transcription	Brain Inferior Temporal Lobe	brain

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