Variant report
| Variant | rs686316 |
|---|---|
| Chromosome Location | chr11:59803645-59803646 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
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rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1144744 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1144747 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2583463 | 0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs2583464 | 0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap] |
| rs2844032 | 0.92[CHB][hapmap] |
| rs2846081 | 0.91[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs474243 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs480569 | 0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs481957 | 0.83[ASN][1000 genomes] |
| rs492674 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs510838 | 0.91[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs567708 | 0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs575699 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs637975 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs686713 | 0.91[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs688086 | 0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832173 | chr11:59788884-59940560 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
