The 2.0 version of rSNPBase

Variant report

Variant rs6863525
Chromosome Location chr5:154250177-154250178
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154239600-154263800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr5:154240400-154250200 Weak transcription Fetal Brain Male brain
3 chr5:154240600-154251000 Weak transcription Fetal Heart heart
4 chr5:154240600-154264800 Weak transcription Stomach Mucosa stomach
5 chr5:154240800-154250200 Weak transcription Brain Inferior Temporal Lobe brain
6 chr5:154240800-154256800 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr5:154241000-154255600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr5:154242000-154256800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr5:154242000-154257600 Strong transcription Fetal Thymus thymus
10 chr5:154242200-154256800 Strong transcription HUES6 Cell Line embryonic stem cell
11 chr5:154242200-154256800 Strong transcription iPS-20b Cell Line embryonic stem cell
12 chr5:154242400-154257000 Strong transcription Primary neutrophils fromperipheralblood blood
13 chr5:154242400-154257000 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr5:154242400-154257600 Strong transcription Cortex derived primary cultured neurospheres brain
15 chr5:154242400-154257600 Strong transcription Liver Liver
16 chr5:154242800-154256800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr5:154242800-154256800 Strong transcription Placenta Placenta
18 chr5:154242800-154257000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr5:154242800-154257000 Strong transcription HUVEC blood vessel
20 chr5:154242800-154257200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr5:154242800-154257600 Strong transcription Rectal Mucosa Donor 29 rectum
22 chr5:154243000-154251400 Weak transcription Psoas Muscle Psoas
23 chr5:154243200-154256400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
24 chr5:154243200-154257000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr5:154243200-154257200 Strong transcription Primary T regulatory cells fromperipheralblood blood
26 chr5:154243200-154257200 Strong transcription Duodenum Smooth Muscle Duodenum
27 chr5:154243200-154257600 Strong transcription Primary T cells fromperipheralblood blood
28 chr5:154243400-154256800 Strong transcription Monocytes-CD14+_RO01746 blood
29 chr5:154243400-154257000 Strong transcription Primary T helper cells PMA-I stimulated --
30 chr5:154243400-154257200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr5:154243600-154257200 Strong transcription Primary monocytes fromperipheralblood blood
32 chr5:154243800-154250400 Weak transcription Hela-S3 cervix
33 chr5:154243800-154257400 Strong transcription Dnd41 blood
34 chr5:154244400-154250200 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr5:154244600-154257600 Strong transcription Primary B cells from peripheral blood blood
36 chr5:154245800-154250200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr5:154245800-154250200 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr5:154245800-154250200 Weak transcription Brain Substantia Nigra brain
39 chr5:154246000-154250200 Weak transcription Brain Germinal Matrix brain
40 chr5:154246000-154250200 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr5:154246000-154252000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr5:154246000-154252800 Weak transcription Small Intestine intestine
43 chr5:154246400-154250200 Weak transcription Ovary ovary
44 chr5:154246600-154250200 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr5:154247200-154250200 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr5:154247400-154257200 Strong transcription Fetal Adrenal Gland Adrenal Gland
47 chr5:154248000-154252400 Strong transcription GM12878-XiMat blood
48 chr5:154248000-154255400 Strong transcription Fetal Stomach stomach
49 chr5:154248000-154255600 Strong transcription Spleen Spleen
50 chr5:154248000-154256800 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015