Variant report

Variant	rs6864395
Chromosome Location	chr5:93016919-93016920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs316927	1.00[AMR][1000 genomes]
rs4591733	1.00[AMR][1000 genomes]
rs7724062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451945	chr5:92858750-93024740	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv830404	chr5:92868336-93048257	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6864395	TMEM170	trans	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93003200-93044400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:93011800-93027200	Weak transcription	Fetal Intestine Large	intestine
3	chr5:93013600-93017000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:93013600-93017600	Weak transcription	HUVEC	blood vessel
5	chr5:93013600-93025400	Weak transcription	Fetal Stomach	stomach
6	chr5:93013600-93039400	Weak transcription	Aorta	Aorta
7	chr5:93013800-93017000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:93013800-93017000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:93013800-93017000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:93013800-93017000	Weak transcription	Osteobl	bone
11	chr5:93013800-93017200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:93013800-93017200	Weak transcription	Adipose Nuclei	Adipose
13	chr5:93013800-93017200	Weak transcription	HSMMtube	muscle
14	chr5:93013800-93017200	Weak transcription	NH-A	brain
15	chr5:93014000-93017000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:93014000-93017000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:93014000-93017000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:93014000-93017200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:93014000-93017400	Weak transcription	HSMM	muscle
20	chr5:93014000-93023200	Weak transcription	Fetal Heart	heart
21	chr5:93016200-93017200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:93016800-93017000	Enhancers	Fetal Brain Female	brain
23	chr5:93016800-93017400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:93016800-93017600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:93016800-93017600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr5:93016800-93018200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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