Variant report

Variant	rs6864561
Chromosome Location	chr5:43416972-43416973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
CCL28	TF binding region
ENSG00000151881	Chromatin interaction
ENSG00000151882	Chromatin interaction
ENSG00000249492	Chromatin interaction

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43402200-43420200	Weak transcription	Gastric	stomach
2	chr5:43411200-43418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:43412600-43420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
5	chr5:43415800-43417000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:43415800-43417200	Enhancers	Hela-S3	cervix
7	chr5:43415800-43417400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:43416200-43417200	Enhancers	Fetal Intestine Small	intestine
9	chr5:43416400-43417400	Enhancers	Stomach Mucosa	stomach
10	chr5:43416600-43417600	Enhancers	Small Intestine	intestine
11	chr5:43416600-43417600	Enhancers	K562	blood
12	chr5:43416800-43417200	Enhancers	Duodenum Mucosa	Duodenum
13	chr5:43416800-43417200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:43416800-43417200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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