Variant report

Variant	rs6864661
Chromosome Location	chr5:61177809-61177810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6859572	0.87[YRI][hapmap];0.94[AFR][1000 genomes]
rs6895331	0.80[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv965604	chr5:61171281-61182073	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61177000-61178000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:61177200-61178000	Enhancers	HMEC	breast
3	chr5:61177200-61178000	Enhancers	NHEK	skin
4	chr5:61177200-61178200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:61177400-61178000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:61177400-61178000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:61177400-61178200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:61177400-61178200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:61177400-61178200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:61177400-61178200	Enhancers	NH-A	brain
11	chr5:61177400-61178400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:61177600-61178000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:61177600-61178000	Enhancers	Osteobl	bone
14	chr5:61177600-61178200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:61177600-61178200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:61177800-61178200	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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