Variant report

Variant	rs6865615
Chromosome Location	chr5:90361488-90361489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10942624	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12186662	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13179479	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13180409	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1819073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1828177	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs1828178	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs1848486	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1848487	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1852734	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1858070	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2048217	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs2367186	0.84[ASN][1000 genomes]
rs2367274	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2463775	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2662278	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2662279	0.91[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2662280	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2662281	0.81[ASN][1000 genomes]
rs2662282	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2662283	0.91[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2662284	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2697543	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2697544	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2697546	0.91[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28875340	0.87[EUR][1000 genomes]
rs4254936	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4454077	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6452930	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6452934	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6452935	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6882081	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs689544	0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7706034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719311	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7723511	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7733230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs937920	0.91[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes]
rs998788	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90341200-90376600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:90344800-90368000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:90352400-90367000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:90354800-90368200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:90358400-90391000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:90358600-90362400	Weak transcription	Gastric	stomach
7	chr5:90358600-90368800	Weak transcription	Fetal Kidney	kidney
8	chr5:90358600-90375400	Weak transcription	Brain Anterior Caudate	brain
9	chr5:90360000-90367000	Weak transcription	NHDF-Ad	bronchial
10	chr5:90360200-90386400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:90360600-90361600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:90361000-90362400	Enhancers	Osteobl	bone
13	chr5:90361200-90361600	Active TSS	Aorta	Aorta
14	chr5:90361200-90361600	Enhancers	Ovary	ovary
15	chr5:90361200-90362000	Enhancers	Colon Smooth Muscle	Colon
16	chr5:90361200-90362200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:90361400-90361800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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