Variant report

Variant	rs6865996
Chromosome Location	chr5:154027949-154027950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154026316..154028892-chr5:154135957..154138460,3	K562	blood:
2	chr5:154023772..154028436-chr5:154235894..154238636,6	K562	blood:
3	chr5:154026946..154029914-chr5:154142078..154144700,2	K562	blood:
4	chr5:154025141..154035158-chr5:154131407..154139853,27	K562	blood:
5	chr5:154027746..154032720-chr5:154236442..154239837,5	MCF-7	breast:
6	chr5:154027659..154031934-chr5:154132640..154136119,5	MCF-7	breast:
7	chr5:154024346..154028436-chr5:154236523..154238636,3	K562	blood:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6861796	1.00[AFR][1000 genomes]
rs9686274	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154026800-154028000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:154026800-154028600	Flanking Active TSS	K562	blood
3	chr5:154027200-154032600	Weak transcription	NHLF	lung
4	chr5:154027400-154028000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr5:154027400-154028000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr5:154027400-154028000	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:154027400-154028000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr5:154027400-154028000	Enhancers	Right Atrium	heart
9	chr5:154027400-154028200	Enhancers	Adipose Nuclei	Adipose
10	chr5:154027400-154028200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr5:154027400-154028200	Enhancers	Pancreas	Pancrea
12	chr5:154027400-154028200	Enhancers	Small Intestine	intestine
13	chr5:154027400-154029200	Enhancers	Fetal Intestine Small	intestine
14	chr5:154027400-154029800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr5:154027400-154029800	Enhancers	Liver	Liver
16	chr5:154027400-154029800	Enhancers	Fetal Intestine Large	intestine
17	chr5:154027400-154032400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:154027400-154032400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:154027400-154032600	Weak transcription	HMEC	breast
20	chr5:154027400-154032800	Weak transcription	Right Ventricle	heart
21	chr5:154027400-154033600	Weak transcription	Colon Smooth Muscle	Colon
22	chr5:154027400-154033600	Weak transcription	Osteobl	bone
23	chr5:154027400-154034600	Weak transcription	Lung	lung
24	chr5:154027600-154028000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:154027600-154028000	Weak transcription	Gastric	stomach
26	chr5:154027600-154028400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:154027600-154029800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:154027600-154030000	Weak transcription	Fetal Thymus	thymus
29	chr5:154027600-154032400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr5:154027600-154032600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:154027600-154032600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr5:154027600-154032800	Weak transcription	Colonic Mucosa	Colon
33	chr5:154027600-154033200	Weak transcription	Spleen	Spleen
34	chr5:154027600-154033400	Weak transcription	Fetal Lung	lung
35	chr5:154027600-154033800	Weak transcription	NHDF-Ad	bronchial
36	chr5:154027800-154028000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr5:154027800-154028000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr5:154027800-154028200	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr5:154027800-154028400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:154027800-154028400	Active TSS	Duodenum Mucosa	Duodenum
41	chr5:154027800-154029200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:154027800-154029800	Enhancers	Stomach Mucosa	stomach
43	chr5:154027800-154029800	Enhancers	HepG2	liver
44	chr5:154027800-154032600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:154027800-154032600	Weak transcription	NHEK	skin
46	chr5:154027800-154032800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:154027800-154033200	Weak transcription	GM12878-XiMat	blood

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