Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11167599	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12153071	0.80[ASN][1000 genomes]
rs12186623	0.87[ASN][1000 genomes]
rs12654450	0.84[ASN][1000 genomes]
rs35239101	0.89[AFR][1000 genomes]
rs36063192	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4077752	0.89[AFR][1000 genomes]
rs4077753	0.89[AFR][1000 genomes]
rs4437425	0.84[ASN][1000 genomes]
rs4583879	0.90[AFR][1000 genomes]
rs4629584	0.90[AFR][1000 genomes]
rs55829928	0.89[ASN][1000 genomes]
rs56269251	0.89[ASN][1000 genomes]
rs72799186	0.89[ASN][1000 genomes]
rs72799196	0.89[ASN][1000 genomes]
rs72799198	0.85[ASN][1000 genomes]
rs72799200	0.91[ASN][1000 genomes]
rs72799201	0.91[ASN][1000 genomes]
rs72799202	0.89[ASN][1000 genomes]
rs72801007	0.91[ASN][1000 genomes]
rs72802852	0.87[ASN][1000 genomes]
rs72802853	0.87[ASN][1000 genomes]
rs72802874	0.84[ASN][1000 genomes]
rs72802883	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv883049	chr5:152159184-152399894	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152196800-152198600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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