Variant report

Variant	rs6866081
Chromosome Location	chr5:106296573-106296574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10052471	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10062690	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10068963	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10075477	0.82[ASN][1000 genomes]
rs10477875	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10479391	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11744426	1.00[JPT][hapmap]
rs12054932	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12653426	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28369477	0.85[ASN][1000 genomes]
rs4262090	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4264929	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs4351137	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4382150	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4476284	0.82[ASN][1000 genomes]
rs4533874	0.80[ASN][1000 genomes]
rs4632787	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4957679	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6867623	0.82[ASN][1000 genomes]
rs6874482	0.82[ASN][1000 genomes]
rs6880364	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6893146	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7443308	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9327985	0.82[ASN][1000 genomes]
rs9327986	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1017901	chr5:105847628-106298378	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106288400-106302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:106292400-106302000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:106295000-106296600	Enhancers	HUVEC	blood vessel
4	chr5:106295600-106298400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:106295800-106298600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:106295800-106299200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:106295800-106302200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:106295800-106309400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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