Variant report

Variant	rs6866398
Chromosome Location	chr5:17318806-17318807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13159587	0.92[EUR][1000 genomes]
rs298507	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs298511	0.83[EUR][1000 genomes]
rs298512	0.82[EUR][1000 genomes]
rs298513	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298518	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298520	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv461988	chr5:17296342-17484038	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv597313	chr5:17296342-17484038	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17307000-17320200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:17315000-17320800	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:17316200-17319000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:17317000-17319000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:17317000-17319200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:17317000-17320000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:17317400-17319400	Enhancers	A549	lung
8	chr5:17317400-17320000	Enhancers	Hela-S3	cervix
9	chr5:17317600-17319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:17317800-17319600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:17318000-17319000	Weak transcription	NHDF-Ad	bronchial
12	chr5:17318000-17325800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:17318200-17319400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:17318200-17319400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:17318200-17319400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr5:17318400-17320400	Enhancers	Primary B cells from cord blood	blood
17	chr5:17318600-17319000	Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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