Variant report

Variant	rs6867877
Chromosome Location	chr5:147327214-147327215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60395301	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6883640	0.85[ASN][1000 genomes]
rs6892407	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv16820	chr5:147320290-147337996	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3692876	chr5:147326902-147337164	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147326200-147327400	Active TSS	H1 Cell Line	embryonic stem cell
2	chr5:147326200-147327400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr5:147326200-147327600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr5:147326200-147327600	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr5:147326200-147327600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr5:147326200-147328400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:147326200-147328400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr5:147326400-147327400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:147326400-147327600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr5:147326600-147345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:147326800-147327400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
12	chr5:147326800-147327400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr5:147327000-147343200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:147327200-147328000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:147327200-147343400	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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