Variant report

Variant	rs6868644
Chromosome Location	chr5:8981136-8981137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:8974747..8977167-chr5:8980772..8982966,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10038936	0.92[ASN][1000 genomes]
rs10056871	0.92[ASN][1000 genomes]
rs10058520	0.92[ASN][1000 genomes]
rs10062754	0.92[ASN][1000 genomes]
rs10512999	0.92[ASN][1000 genomes]
rs11134338	0.80[EUR][1000 genomes]
rs11134339	0.80[EUR][1000 genomes]
rs11134341	0.80[EUR][1000 genomes]
rs11134342	0.80[EUR][1000 genomes]
rs11134343	0.80[EUR][1000 genomes]
rs1124255	0.80[EUR][1000 genomes]
rs1124256	0.80[EUR][1000 genomes]
rs11738634	0.80[EUR][1000 genomes]
rs11951651	0.80[EUR][1000 genomes]
rs11952933	0.80[EUR][1000 genomes]
rs12186781	0.80[EUR][1000 genomes]
rs12187003	0.80[EUR][1000 genomes]
rs12187849	0.80[EUR][1000 genomes]
rs12188659	0.80[EUR][1000 genomes]
rs12189462	0.80[EUR][1000 genomes]
rs12521690	0.92[ASN][1000 genomes]
rs12523277	0.80[EUR][1000 genomes]
rs13163334	0.92[ASN][1000 genomes]
rs13164654	0.89[ASN][1000 genomes]
rs13175700	0.92[ASN][1000 genomes]
rs13185652	0.92[ASN][1000 genomes]
rs13188103	0.92[ASN][1000 genomes]
rs13359910	0.87[ASN][1000 genomes]
rs1457772	0.80[EUR][1000 genomes]
rs1585204	0.91[ASN][1000 genomes]
rs16881756	0.92[ASN][1000 genomes]
rs16881805	0.80[EUR][1000 genomes]
rs16881807	0.80[EUR][1000 genomes]
rs1902806	0.92[ASN][1000 genomes]
rs1902807	0.92[ASN][1000 genomes]
rs1902808	0.92[ASN][1000 genomes]
rs1947586	0.92[ASN][1000 genomes]
rs1947587	0.92[ASN][1000 genomes]
rs2219397	0.92[ASN][1000 genomes]
rs2219398	0.92[ASN][1000 genomes]
rs2388008	0.92[ASN][1000 genomes]
rs2962650	0.87[ASN][1000 genomes]
rs2962651	0.87[ASN][1000 genomes]
rs2962654	0.87[ASN][1000 genomes]
rs2962717	0.87[ASN][1000 genomes]
rs2962724	0.90[ASN][1000 genomes]
rs2962733	0.90[ASN][1000 genomes]
rs2963324	0.87[ASN][1000 genomes]
rs2963325	0.85[ASN][1000 genomes]
rs2963326	0.87[ASN][1000 genomes]
rs2963327	0.87[ASN][1000 genomes]
rs2963337	0.87[ASN][1000 genomes]
rs2963363	0.87[ASN][1000 genomes]
rs2963370	0.90[ASN][1000 genomes]
rs2963371	0.90[ASN][1000 genomes]
rs2963375	0.90[ASN][1000 genomes]
rs2963376	0.89[ASN][1000 genomes]
rs2963380	0.90[ASN][1000 genomes]
rs2963384	0.90[ASN][1000 genomes]
rs34958715	0.92[ASN][1000 genomes]
rs3921964	0.92[ASN][1000 genomes]
rs4431316	0.92[ASN][1000 genomes]
rs4432854	0.92[ASN][1000 genomes]
rs4452535	0.89[ASN][1000 genomes]
rs4472235	0.80[EUR][1000 genomes]
rs4612031	0.80[EUR][1000 genomes]
rs4624764	0.89[ASN][1000 genomes]
rs4627964	0.92[ASN][1000 genomes]
rs58854317	0.92[ASN][1000 genomes]
rs61036506	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6555587	0.92[ASN][1000 genomes]
rs6555588	0.92[ASN][1000 genomes]
rs6861103	0.85[ASN][1000 genomes]
rs6862506	0.92[ASN][1000 genomes]
rs6863266	0.92[ASN][1000 genomes]
rs6866139	0.92[ASN][1000 genomes]
rs6870017	0.92[ASN][1000 genomes]
rs6870588	0.80[EUR][1000 genomes]
rs6871960	0.92[ASN][1000 genomes]
rs6875463	0.87[ASN][1000 genomes]
rs6877048	0.92[ASN][1000 genomes]
rs6880066	0.92[ASN][1000 genomes]
rs6880494	0.92[ASN][1000 genomes]
rs6880574	0.92[ASN][1000 genomes]
rs6883897	0.92[ASN][1000 genomes]
rs6884293	0.92[ASN][1000 genomes]
rs6884680	0.92[ASN][1000 genomes]
rs7703582	0.80[EUR][1000 genomes]
rs9313264	0.92[ASN][1000 genomes]
rs9313265	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881438	chr5:8728874-9695667	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	esv3492014	chr5:8749469-9004066	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3492015	chr5:8749469-9004066	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv461944	chr5:8758041-9209831	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv597069	chr5:8758041-9209831	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1016937	chr5:8824417-9402871	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv537638	chr5:8824417-9402871	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
8	nsv918004	chr5:8824417-9402871	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
9	nsv830199	chr5:8855056-9024096	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv482764	chr5:8906261-9056262	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
11	nsv881150	chr5:8961561-9041935	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv880848	chr5:8964069-9041935	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8979200-8981400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:8980400-8981800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:8980400-8982000	Enhancers	HMEC	breast
4	chr5:8980600-8981400	Enhancers	NHDF-Ad	bronchial
5	chr5:8980600-8981600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:8981000-8981400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:8981000-8981800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:8981000-8981800	Enhancers	NHEK	skin
9	chr5:8981000-8981800	Enhancers	Osteobl	bone

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