Variant report

Variant	rs6870880
Chromosome Location	chr5:50256207-50256208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:50250054..50253595-chr5:50255178..50258744,3	K562	blood:
2	chr5:50254119..50256881-chr5:50262560..50265438,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250360	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10035173	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11746939	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1345777	0.84[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs149185	0.84[AMR][1000 genomes]
rs151986	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs151997	0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs152817	0.85[YRI][hapmap]
rs250230	1.00[YRI][hapmap]
rs26087	0.86[AMR][1000 genomes]
rs26088	0.86[AMR][1000 genomes]
rs26089	0.86[AMR][1000 genomes]
rs26090	0.86[AMR][1000 genomes]
rs27247	0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs27249	0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs27270	0.86[AMR][1000 genomes]
rs27271	0.86[AMR][1000 genomes]
rs27286	0.86[AMR][1000 genomes]
rs27472	0.84[AMR][1000 genomes]
rs27476	0.86[AMR][1000 genomes]
rs27477	0.82[AMR][1000 genomes]
rs27579	0.85[AMR][1000 genomes]
rs27847	0.86[AMR][1000 genomes]
rs28090	0.86[AMR][1000 genomes]
rs3846498	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846499	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846500	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367393	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6882235	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9292165	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv598116	chr5:50064292-50318550	Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830286	chr5:50165805-50374600	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50255400-50258400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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