Variant report

Variant	rs6871090
Chromosome Location	chr5:95133586-95133587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95000023..95002431-chr5:95132048..95134203,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10476659	0.89[ASN][1000 genomes]
rs13170826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3756706	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3777212	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3822753	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3822754	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6556880	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6890561	0.87[ASN][1000 genomes]
rs9314154	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9314155	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95087800-95134000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:95115400-95137800	Weak transcription	Right Atrium	heart
3	chr5:95115400-95138600	Weak transcription	Gastric	stomach
4	chr5:95115400-95139000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:95115400-95157000	Weak transcription	Aorta	Aorta
6	chr5:95115600-95134000	Strong transcription	HSMM	muscle
7	chr5:95115800-95133800	Weak transcription	HUVEC	blood vessel
8	chr5:95117200-95133600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:95117200-95143000	Weak transcription	Primary B cells from cord blood	blood
10	chr5:95117200-95143200	Weak transcription	Primary T cells from cord blood	blood
11	chr5:95117200-95143400	Weak transcription	Thymus	Thymus
12	chr5:95117400-95144200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:95120800-95138600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:95120800-95138600	Weak transcription	Psoas Muscle	Psoas
15	chr5:95120800-95143400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:95121000-95135400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:95121000-95137600	Weak transcription	Fetal Thymus	thymus
18	chr5:95121000-95156800	Weak transcription	Brain Germinal Matrix	brain
19	chr5:95124400-95138600	Weak transcription	Right Ventricle	heart
20	chr5:95124400-95143800	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:95124600-95134400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:95124600-95139600	Weak transcription	Fetal Lung	lung
23	chr5:95124600-95143800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr5:95124600-95144000	Weak transcription	Brain Substantia Nigra	brain
25	chr5:95124600-95154400	Weak transcription	Brain Angular Gyrus	brain
26	chr5:95125000-95154400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:95125600-95136800	Weak transcription	Small Intestine	intestine
28	chr5:95125600-95140800	Weak transcription	GM12878-XiMat	blood
29	chr5:95126400-95143600	Weak transcription	Dnd41	blood
30	chr5:95126800-95139000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:95127800-95149200	Weak transcription	Fetal Brain Female	brain
32	chr5:95128000-95136000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:95128000-95136800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr5:95128000-95143600	Weak transcription	Spleen	Spleen
35	chr5:95128000-95143800	Weak transcription	Lung	lung
36	chr5:95129600-95136600	Weak transcription	Pancreas	Pancrea
37	chr5:95129800-95134000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:95129800-95136200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:95129800-95138800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:95129800-95140200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr5:95129800-95143600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr5:95130000-95143600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr5:95130000-95145000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr5:95130000-95145000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr5:95130000-95157400	Weak transcription	Ovary	ovary
46	chr5:95130200-95134600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr5:95130200-95137400	Weak transcription	Fetal Heart	heart
48	chr5:95130200-95138800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr5:95130200-95140800	Weak transcription	Brain Hippocampus Middle	brain
50	chr5:95130200-95143600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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