Variant report

Variant	rs6871457
Chromosome Location	chr5:35828120-35828121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73090262	0.90[AFR][1000 genomes]
rs73090263	0.90[AFR][1000 genomes]
rs903390	0.95[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35816000-35829200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:35819000-35830200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr5:35822800-35830800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:35823000-35830600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:35823600-35830800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:35824000-35831200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr5:35824200-35830400	Enhancers	Primary T cells from cord blood	blood
9	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:35826400-35829000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr5:35826800-35831600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:35827000-35830600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr5:35827200-35830600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:35827400-35830600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:35827800-35828800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:35827800-35828800	Weak transcription	Fetal Thymus	thymus
17	chr5:35827800-35829000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:35828000-35828400	Weak transcription	Thymus	Thymus
19	chr5:35828000-35828400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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