Variant report

Variant	rs6872007
Chromosome Location	chr5:148125292-148125293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10052533	1.00[AFR][1000 genomes]
rs10057994	0.91[AFR][1000 genomes]
rs10063588	0.84[AFR][1000 genomes]
rs10063839	0.95[AFR][1000 genomes]
rs13358560	0.98[AFR][1000 genomes]
rs13359242	1.00[AFR][1000 genomes]
rs6869573	1.00[AFR][1000 genomes]
rs6870421	0.97[AFR][1000 genomes]
rs6885020	1.00[AFR][1000 genomes]
rs7736657	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148119600-148126200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:148119600-148126200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:148119600-148126400	Weak transcription	Fetal Lung	lung
4	chr5:148119600-148135000	Weak transcription	Right Atrium	heart
5	chr5:148120800-148125600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:148120800-148125800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:148121000-148125800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:148121200-148125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:148121400-148125600	Weak transcription	Fetal Heart	heart
10	chr5:148121400-148126200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:148121400-148126200	Weak transcription	Adipose Nuclei	Adipose
12	chr5:148121600-148126800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:148124600-148126000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr5:148125000-148125400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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