Variant report

Variant	rs6872122
Chromosome Location	chr5:114197975-114197976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10054438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076766	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10478192	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594845	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6594847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6865846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6887585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6896091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7718292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114195200-114200600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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