Variant report

Variant	rs6872686
Chromosome Location	chr5:76185149-76185150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2227777	1.00[EUR][1000 genomes]
rs2227803	1.00[EUR][1000 genomes]
rs2227810	1.00[EUR][1000 genomes]
rs6864739	1.00[EUR][1000 genomes]
rs6868171	1.00[EUR][1000 genomes]
rs73131649	1.00[EUR][1000 genomes]
rs73131650	1.00[EUR][1000 genomes]
rs7445566	0.82[AMR][1000 genomes]
rs7708580	1.00[EUR][1000 genomes]
rs7728753	1.00[EUR][1000 genomes]
rs9918276	1.00[EUR][1000 genomes]
rs9918278	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv524024	chr5:76166018-76187777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76171600-76192600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr5:76174600-76186400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:76175800-76187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:76177800-76187400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:76183200-76188800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:76183400-76194200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr5:76184600-76185200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:76184800-76185200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:76184800-76185600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:76184800-76188000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:76185000-76185400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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