Variant report

Variant	rs6873084
Chromosome Location	chr5:16748157-16748158
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16743803..16745620-chr5:16745640..16748516,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10043510	0.92[CEU][hapmap]
rs10051930	0.92[CEU][hapmap]
rs10057142	0.84[EUR][1000 genomes]
rs10077298	0.91[ASN][1000 genomes]
rs13359146	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs6896958	1.00[CEU][hapmap];0.88[ASN][1000 genomes]
rs7729975	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs7730837	0.91[ASN][1000 genomes]
rs9312925	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16736400-16781400	Weak transcription	Esophagus	oesophagus
2	chr5:16736800-16756600	Weak transcription	Ovary	ovary
3	chr5:16736800-16758200	Weak transcription	Spleen	Spleen
4	chr5:16736800-16761200	Weak transcription	Hela-S3	cervix
5	chr5:16736800-16761800	Weak transcription	Colonic Mucosa	Colon
6	chr5:16736800-16762400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:16737000-16780400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:16738400-16748800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:16739200-16750600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:16739400-16758000	Weak transcription	Stomach Mucosa	stomach
11	chr5:16740400-16748200	Weak transcription	Right Ventricle	heart
12	chr5:16741000-16755800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:16741000-16758400	Weak transcription	Aorta	Aorta
14	chr5:16741200-16782000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:16741400-16754600	Weak transcription	Fetal Kidney	kidney
16	chr5:16741800-16761400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:16742200-16751800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:16742200-16752000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:16742200-16752600	Weak transcription	NHEK	skin
20	chr5:16742400-16757800	Weak transcription	Adipose Nuclei	Adipose
21	chr5:16742400-16761800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:16742400-16773400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:16742600-16749000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:16742600-16749600	Weak transcription	NHLF	lung
25	chr5:16742600-16750000	Weak transcription	Brain Germinal Matrix	brain
26	chr5:16742800-16749600	Weak transcription	Fetal Muscle Leg	muscle
27	chr5:16742800-16751200	Weak transcription	NHDF-Ad	bronchial
28	chr5:16742800-16754400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:16742800-16767800	Weak transcription	Fetal Brain Female	brain
30	chr5:16743400-16750600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:16743400-16753800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:16743400-16760800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:16743600-16777600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:16743800-16749800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:16744000-16754200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:16744000-16754200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr5:16744600-16749200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:16744800-16749000	Weak transcription	Lung	lung
39	chr5:16744800-16749000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:16744800-16749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:16744800-16749800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr5:16744800-16750200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:16744800-16753800	Weak transcription	HSMM	muscle
44	chr5:16744800-16755600	Weak transcription	Fetal Lung	lung
45	chr5:16744800-16758400	Weak transcription	Gastric	stomach
46	chr5:16744800-16776800	Weak transcription	Left Ventricle	heart
47	chr5:16745000-16751400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:16745200-16752000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr5:16745800-16758600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr5:16746000-16778200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links