Variant report

Variant	rs6873862
Chromosome Location	chr5:167192499-167192500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1023629	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12187148	0.86[CHB][hapmap]
rs12519097	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069080	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17069140	0.81[AMR][1000 genomes]
rs17069150	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2337015	0.82[JPT][hapmap]
rs3749800	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4357058	0.85[AMR][1000 genomes]
rs56844394	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60893801	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6555767	0.82[JPT][hapmap]
rs719254	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73801366	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167183400-167197200	Weak transcription	HSMMtube	muscle
2	chr5:167185000-167192800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167185200-167193000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:167186800-167197200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:167189600-167192800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167190000-167192600	Enhancers	NHEK	skin
7	chr5:167190600-167195600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:167190800-167192600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:167190800-167193000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:167191000-167192600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:167191200-167193000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:167191400-167192600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:167191400-167192800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr5:167191400-167192800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:167191400-167192800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:167191400-167193000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr5:167191400-167193000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:167191600-167192600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:167191600-167192800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr5:167191600-167192800	Weak transcription	HMEC	breast
21	chr5:167191600-167193000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:167191600-167197400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:167191800-167192800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:167192000-167195000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:167192000-167195400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:167192200-167194800	Weak transcription	Osteobl	bone
27	chr5:167192400-167194600	Weak transcription	NHDF-Ad	bronchial

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